2001 A6 rear sunroof drains?
This is the cap at the end of the sunroof rail:
This is where the drain comes out behind the rear wheel fender liner:
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You can do this job with the headliner in place.
If you take off the c/d pillar trim, you can sneak you hand between the headliner and the roof to pull off the connector. Gently pull down on the edge of the headliner to get enough space for you hand. Then you pull the tube to the side of the headliner in order to snake the tube with a wire. I used a piece of 14 guage solid conductor insulated wire. Just stiff enough to snake down the tube, but not so rigid to tear the tube.
My tube was clear, but the problem was a cracked connector, as discussed above. So with the connector pulled to the side, I was able to butter it up with a small amount of silicone, and then reattach the connector to the sunroof nipple. I tested the connection by pouring some water into the sunroof channel before I reinstalled the trim. No leaks, so I put back the trim. No more stains. This saves hours of work removing all the pillar trim, mirror and headliner.
I did the whole job in less than 1 hour, taking my time. Second time would take less than 1/2 hour. Following the instructions for the headliner removal in the link above, remove the d/d pillar trim but do not remove the entire "B" trim or "A" trim, just the top fasteners of the B pillar and end of the A pillar. You will be able to drop the headliner enough on one side to access the sunroof nipple and connection.





