Window programming
Take a look at this youtube video regarding an Audi TT, he discusses re-calibrating these things after a battery disconnect/reconnect cycle. It sounds like it could be pinch protection. I replaced the entire window motor on my front drivers side window and re-programmed the computer on the window motor, and it goes all the way up / down although acts fussy sometimes. I believe its the pinch prot - I'm goign to re-program for that myself.
Anyway, let us know if the video's technique works for you. It is very similar to the pinch protection program/reset on the sun roof.






